// =================== Listing of Molecules Available ===============
//
// Each entry below is an array element that is itself an array.
// Within one entry, the array elements are:
//   Short Name
//   Popup/Banner Text
//   Detailed description
//   Author

var AuthorList = [
[0,"Eric Martz","http://martz.molviz.org"],
[1,"Craig Martin","http://people.chem.umass.edu/cmartin"],
[2,"Paul Lahti","http://people.chem.umass.edu/lahti"],
[3,"Wayne Decatur","http://people.umass.edu/wdecatur"],
[4,"Lynmarie Thompson","http://people.chem.umass.edu/thompson"],
[5,"Jeanne Hardy","http://people.chem.umass.edu/jhardy"],
[6,"Scott Garman","http://www.biochem.umass.edu/garman"],
[7,"Karsten Theis","http://www.biochem.umass.edu/theis"],
[8,"CBI students: Rosie Combs-Bachmann, Mariel Feliciano, Steve McCarron, Amanda Hussey","http://www.proteopedia.org/wiki/index.php/CBI_Molecules"],
[9,"CBI student: Nilima Kolli","http://www.proteopedia.org/wiki/index.php/CBI_Molecules"],
[10,"CBI students: Jinyi Lim, Kristine Faye Pobre, Mangai Periasamy, Mylene Ferrolino","http://www.proteopedia.org/wiki/index.php/CBI_Molecules"],
[11,"CBI student: Johan Sunryd","http://www.proteopedia.org/wiki/index.php/CBI_Molecules"],
[12,"CBI student: Cristina B. Martin","http://www.proteopedia.org/wiki/index.php/CBI_Molecules"],
[13,"CBI student: Rohan Patil","http://www.proteopedia.org/wiki/index.php/CBI_Molecules"],
[14,"CBI student: Bradley Duncan","http://www.proteopedia.org/wiki/index.php/CBI_Molecules"],
[15,"CBI students: Tsung-Yi Lin, Jon Amoroso","http://www.proteopedia.org/wiki/index.php/CBI_Molecules"],
[16,"CBI student: Diego Amado-Torres","http://www.proteopedia.org/wiki/index.php/CBI_Molecules"],
[17,"CBI students: Shiela M. Jones, Daniel Moyano-Marino","http://www.proteopedia.org/wiki/index.php/CBI_Molecules"],
[18,"CBI student: Nick Borotto","http://www.proteopedia.org/wiki/index.php/CBI_Molecules"],
[19,"CBI students: John Hangasky, Breanne Holmes","http://www.proteopedia.org/wiki/index.php/CBI_Molecules"],
[20,"CBI student: Samantha Nicholls","http://www.proteopedia.org/wiki/index.php/CBI_Molecules"],
[99,"Author Name","URL"]

]


// =================== Listing of Molecules Available ===============
//
// Each entry below is an array element that is itself an array.
// Within one entry, the array elements are:
//   Short Name
//   link address for presentation
//   Detailed description
//   Popup/Banner (Twitter-like) Text
//   Author

var MoleculeList = [
["Tamiflu","http://proteopedia.org/wiki/index.php/User:Eric_Martz/Molecular_Playground/Tamiflu",
"The Tamiflu® drug binds to a protein on the influenza virus (neuraminidase) that the virus needs in order to infect cells. This structure shows the drug binding to, and inhibiting, the target protein, and hence helping to control infection by flu, including H1N1.",
"An anti-influenza drug that could save you from H1N1!",
0],

["HIV Protease","http://proteopedia.org/wiki/index.php/User:Eric_Martz/Molecular_Playground/HIVDrug",
"The Human Immunodeficiency Virus (HIV), responsible for AIDS, uses a protease (an enzyme) that is essential to its infection and reproduction. Scientists have designed an inhibitor of this enzyme that effectively stops viral growth, and has dramatically extended the healthy lifespans of HIV-infected individuals. This structure shows an animation of the drug binding to, and inhibiting, the HIV protease.",
"The anti-viral HIV protease inhibitor is saving lives today",
0],

["Ribosome","http://proteopedia.org/wiki/index.php/Ribosome",
"The Ribosome - the machine that makes protein is largely RNA! This structure led to the Nobel Prize in Chemistry in 2009. We used to think that proteins were the only biomacromolecules that could achieve catalysis. We now think that RNA was the primordialy enzyme.",
"The Ribosome - the machine that makes protein is largely RNA!",
3],

["RNA Polymerase","http://people.chem.umass.edu/cmartin/Jmol/T7RP",
"RNA polymerase transcribes DNA in cells into RNA copies - studied by the Martin lab at UMass",
"RNA polymerase transcribes DNA in cells into RNA copies - studied by the Martin lab at UMass",
1],

["DNA","http://people.chem.umass.edu/cmartin/Jmol/DNATutor",
"DNA - the information storage molecule of life",
"DNA - the information storage molecule of life",
1],

["CRABP","JmolContent/CRABP/index.html",
"Cellular retinoic acid binding protein transports fatty acids in your cells - studied by the Gierasch lab at UMass",
"Cellular retinoic acid binding protein transports fatty acids in your cells - studied by the Gierasch lab at UMass",
1],

["Acetophenone","JmolContent/VibrationalModes.html",
"Vibrational modes in acetophenone, a natural flavoring. Real molecules are not static, but vibrate with thermal energy",
"Vibrational modes in acetophenone, a natural flavoring",
2],

["Zero Calorie Fat I","JmolContent/Sucrose_Polyester.html",
"A sugar-based zero-calorie fat developed by Proctor & Gamble. Although chemically, this molecule should behave like a fat, the unnatural linkage makes it not digestable by our cellular enzymes.",
"A zero-calorie fat developed by Proctor & Gamble",
1],

["Zero Calorie Fat II","JmolContent/Triglyceride.html",
"A zero-calorie fat developed by Proctor & Gamble. Although chemically, this molecule should behave like a fat, the unnatural linkage makes it not digestable by our cellular enzymes.",
"A zero-calorie fat developed by Proctor & Gamble",
1],

["Stapled Peptide","JmolContent/StapPep.html",
"An isolated protein alpha helix is not stable. Protein engineers, however, have stabilized a helix by adding a covalent linkage - a staple.",
"Reengineering proteins: a stapled peptide forms a stable alpha helix!",
1],

["Designed Proton Wire","JmolContent/Usha.html",
"UMass researchers are designing proton wires for solar energy applications. Protons can hop from one imidazole ring to the next along this chain.",
"UMass researchers are designing proton wires for solar energy applications",
1],

["Simple Proton Wire","JmolContent/IMAZOL_chem_playground.html",
"UMass researchers are designing proton wires for solar energy applications. Protons can hop from one imidazole ring to the next along this chain.",
"UMass researchers are designing proton wires for solar energy applications",
1],

["Glutamate Receptor","http://www.proteopedia.org/wiki/index.php/Molecular_Playground/Glutamate_Receptor",
"Glutamate receptors allow neurons to communicate in the brain (Chambers lab, UMass)",
"Glutamate receptors allow neurons to communicate in the brain (Chambers lab, UMass)",
8,"inactive"],

["PPCA","http://www.proteopedia.org/wiki/index.php/Molecular_Playground/Human_PPCA",
"Human lysosomal protease helps proteins fold properly to prevent a metabolic disorder with no known treatment (Garman lab, UMass)",
"Human lysosomal protease helps proteins fold properly to prevent a metabolic disorder with no known treatment (Garman lab, UMass)",
9],

["M2 Transporter","http://www.proteopedia.org/wiki/index.php/Molecular_Playground/Influenza_A_M2_transmembrane_domain",
"Region of Influenza A Viral Protein M2 Responsible for proton transport across membranes during infection by the Influenza virus (Hardy lab, UMass)",
"Region of Influenza A Viral Protein M2 Responsible for pH Regulation (Hardy lab, UMass)",
20],

["CRABP I","http://www.proteopedia.org/wiki/index.php/CRABP_I_%28_Cellular_Retinoic_Acid_Binding_Protein_%29",
"CRABP I carries retinoic acid, essential for vision (Gierasch lab, UMass)",
"CRABP I carries retinoic acid, essential for vision (Gierasch lab, UMass)",
10],

["a-mannosidase I","http://www.proteopedia.org/wiki/index.php/Molecular_Playground/ERMan1",
"Alpha mannosidase I is a catalytic timer for protein degradation (Hebert lab, UMass)",
"A catalytic timer for protein degradation (Hebert lab, UMass)",
11],

["Prolyl hydroxylase","http://www.proteopedia.org/wiki/index.php/Molecular_Playground/Prolyl_Hydroxylase_Domain_%28PHD%29_Enzyme",
"Prolyl Hydroxylase Domain (PHD) enzyme is a cellular oxygen sensor (Knapp lab, UMass)",
"Prolyl Hydroxylase Domain (PHD) enzyme is a cellular oxygen sensor (Knapp lab, UMass)",
12],

["Taxol","http://www.proteopedia.org/wiki/index.php/Molecular_Playground/Taxol",
"Paclitaxel (Taxol), a plant-derived natural product used to treat cancer (Roberts lab, UMass)",
"Paclitaxel (Taxol), a plant-derived natural product used to treat cancer (Roberts lab, UMass)",
13],

["Chymotrypsin","http://www.proteopedia.org/wiki/index.php/Molecular_playground/Chymotrypsin",
"Chymotrypsin is a digestive enzyme that breaks down proteins. The Rotello lab is designing nanoparticles to target this enzyme (Rotello lab, UMass)",
"Chymotrypsin is a digestive enzyme that breaks down proteins (targeted in the Rotello lab, UMass)",
14],

["Bio-machine","http://www.proteopedia.org/wiki/index.php/6-deoxyerythronolide_B_synthase_%28DEBS%29",
"Erythromycin dehydratase is one component of a multi-protein machine for making new antibiotics (Schnarr lab, UMass)",
"Erythromycin dehydratase is one component of a multi-protein machine for making new antibiotics (Schnarr lab, UMass)",
15],

["Biotin-Avidin","http://www.proteopedia.org/wiki/index.php/Molecular_Playground/Biotin_binding_avidin",
"Once a biotin has bound a pocket in avidin, it is almost impossible to remove (used in the Thayumanavan lab, UMass)",
"Once a biotin has bound a pocket in avidin, it is almost impossible to remove (used in the Thayumanavan lab, UMass)",
16],

["Asp Receptor","http://www.proteopedia.org/wiki/index.php/Molecular_Playground/Bacterial_Chemotaxis_Receptors",
"A bacterial chemotaxis receptor protein used by bacteria to 'smell' their environment (Thompson & Weis labs, UMass)",
"A bacterial chemotaxis receptor protein used by bacteria to 'smell' their environment (Thompson & Weis labs, UMass)",
17],

["Beta2 microglobulin","http://www.proteopedia.org/wiki/index.php/Molecular_playground/beta_2_microglobulin",
"Copper binding leads beta 2 microglobulin to form amyloid fibers in kidney dialysis patients (Vachet lab, UMass)",
"Copper binding leads beta 2 microglobulin to form amyloid fibers in kidney dialysis patients (Vachet lab, UMass)",
18],

["FIH Protein","http://www.proteopedia.org/wiki/index.php/Molecular_Playground/FIH",
"The iron site in FIH protein helps cells respond to oxygen levels (Knapp lab, UMass)",
"The iron site in FIH protein helps cells respond to oxygen levels (Knapp lab, UMass)",
19]

]

var dummyV = [

["ShortName","URL",
"LongBlurb",
"ShortBlurb",
1]

]